GSOR 301014

Oryza sativa L.



Developed from: Arkansas United States
Maintained by: Rice Genetic Stock Center
NPGS received: 28-Jul-2007
Backup location: National Center for Genetic Resources Preservation
Life form: Annual
Pedigree:
Improvement status: Genetic material
Reproductive uniformity:
Form received: Seed

Accession names and identifiers

Bico Branco
Type: Local name
NSFTV# 16
Type: Developer identifier
GSOR 301014
Type: Site identifier
Group: NSF
Comment: RICE DIVERSITY PANEL
IRGC 117658
Type: Other or unclassified name

Additional Availability Information

Please send an email to gsor@ars-grin.gov to order the entire Rice Diversity Panel (409 accessions).

Narrative

To represent the range of genetic diversity found in cultivated Asian rice, 409 Oryza sativa accessions were selected from around the world. They cover the full geographic and ecological range of rice- from Indonesian paddy terraces, to the harsh upland soils of northern Thailand; from rapidly rising Chinese riverbeds to African mangrove environments. The 409 O. sativa accessions represent all five sub-populations of rice: indica, aus, tropical japonica, temperate japonica and Group V (sometimes called aromatic or basmati) varieties. The diverse set of rice accessions also includes a wide range of important economic phenotypes, including varieties known to be resistant to diseases and insects or tolerant to flooding, drought, high salt concentrations, low mineral nutrition. There are also varieties with varying cooking qualities, such as different grain colors, lengths, textures, and fragrance. The accessions were chosen to build upon several previous studies, including a subset of the varieties used by Garris et al. (2005) to evaluate sub-population structure in O. sativa. Approximately 200 of our accessions overlap with the 3,000 analyzed for diversity within the internationally-funded Generation Challenge Program (GCP) and 159 overlap with the USDA-ARS rice core collection. This Rice Diversity Panel was fingerprinted with 36 simple sequence repeat (SSR) markers and evaluated for 18 agro-morphological traits. The rice diversity panel with the accompanying genetic and phenotypic information provides a valuable foundation for association mapping, understanding the basis of both genotypic and phenotypic differences within and between subpopulations, and rice improvement programs.

Source History

Citations

  • Reference: Ehsan Shakiba, Jeremy D. Edwards, Farman Jodari, Sara E. Duke, Angela M. Baldo, Pavel Korniliev, Susan R. McCouch, Georgia C. Eizenga . 2017. Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome-wide analysis. PloS One 12(3):e0172133. doi:10.1371/journal.pone.0172133

  • Reference: McCouch, Susan R., M.H. Wright, C-W. Tung, L.G. Maron, K.L. McNally, M. Fitzgerald, N. Singh, G. DeClerck, F. A-Perez, P. Korniliev, A.J. Greenberg, M.E.B. Naredo, S.M.Q. Mercado, S.E. Harrington, Y. Shi, D.A. Branchini, P.R.K-Falcao, H. Leung, K. Ebana, M. Yano, G. Eizenga, A. McClung, and J. Mezey. 2016. Open access resources for genome-wide association mapping in rice. Nat Commun . doi:10.1038/NCOMMS10532

  • Reference: Georgia C. Eizenga, Md. Liakat Ali, Rolfe J. Bryant, Kathleen M. Yeater, Anna M. McClung, Susan R. McCouch. 2014. Registration of the Rice Diversity Panel 1 for Genome-Wide Association Studies. J Plant Reg 8(1):109.

  • Reference: Zhao, Keyan, C-W Tung, G.C. Eizenga, M.H. Wright, Md L. Ali, A.H. Price, G.J. Norton, M. R. Islam, A. Reynolds, J. Mezey, A.M. McClung, C.D. Bustamate, and S.R. McCouch. 2011. Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nat Commun . Comment: DOI:10.1038/ncomms1467

  • Reference: Ali, M. Liakat, Anna M. McClung, Melissa H. Jia, Jennifer A. Kimball, Susan R. McCouch, and Georgia C. Eizenga. 2011. A Rice Diversity Panel Evaluated for Genetic and Agro-Morphological Diversity between Subpopulations and its Geographic Distribution. Crop Sci 51:2021-2035. Comment: DOI: 10.2135/cropsci2010.11.0641

  • Reference: Zhao, Keyan, M. Wright, J. Kimball, G. Eizenga, A. McClung, M. Kovach, W. Tyagi, Md. L. Ali, C.-W. Tung, A. Reynolds, C. D. Bustamante, and S.R. McCouch. 2010. Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome. PloS One 5(5). Comment: DOI:10.1371/journal.pone.0010780

Observations

Click link below to see detailed observation data:
Detailed Accession Observation Page

Characterization and Evaluation Data:
Category CHEMICAL DISEASE GROWTH MORPHOLOGY PHENOLOGY PRODUCTION
Descriptor Alkali/Spreading Value Amylose Protein Rice Blast Plant Height 1 Plant Height 2 Awn Type Bran Color Hull Color Length of Kernel Plant Type - Culm Angle Width of Kernel Days to Anthesis Days to Flower 1000 Kernel Weight-Rough
Value 5.5 26 8 2.5 9 - 160 CENTIMETERS OR MORE 162 0 - ABSENT 3 - SPECKLED BROWN 2 - STRAW 7.5 7 - SPREADING 2.1 4 - 90 - 99 DAYS 90 23.15
Study/Environment NSF.PROJECT.OBS NSF.PROJECT.OBS NSF.PROJECT.OBS NSF.PROJECT.OBS NSF.PROJECT.OBS NSF.PROJECT.OBS NSF.PROJECT.OBS NSF.PROJECT.OBS NSF.PROJECT.OBS NSF.PROJECT.OBS NSF.PROJECT.OBS NSF.PROJECT.OBS NSF.PROJECT.OBS NSF.PROJECT.OBS NSF.PROJECT.OBS

Molecular Data:
Poly Type MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE MICROSATELLITE
Marker RM5 RM001 RM484 RM171 RM55 RM162 RM271 RM413 RM447 RM44 RM536 RM133 RM307 RM22 RM237 RM495 RM125 RM178 RM316 RM154 RM277 RM215 RM152 RM011 RM408 RM284 RM338 RM124 RM161 RM454 RM507 RM208 RM431 RM118 RM287 RM452
Value 114 114 84 84 292 292 336 336 233 233 241 241 90 90 66 66 113 113 107 107 235 235 228 228 121 121 192 192 192 192 157 157 130 130 114 114 197 197 187 187 113 113 148 148 144 144 121 121 125 125 142 142 178 178 271 271 180 180 269 269 259 259 170 170 239 239 156 156 101 101 207 207
Evaluation RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI RICEDIVERSITY2011CROPSCI
Study Type GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY GDIVERSITY
Inventory ID GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV GSOR 301014 0.002 LV